AdvancedInformatics2021
Advanced Informatics, Winter 2021
‘Textbook’
- PDF version
- Source code for the book.
- Class website
Lab Exercises
Week 1
- I initialized my repository and will create a pull request on GitHub.
Week 2
The R markdown files for week 2’s lab exercise can be found here.
Week 3
The R markdown and HTML output files are found in this repository.
Week 4
The writeup for week 4’s exercise is found in this repository.
The image ouput from my snakemake pipeline is below:
Week 5
The R markdown for week 5 can be found in this repository.
Week 6
Week 6’s lab exercise can be found in this repository. A tree of my working directory, demonstrating that my symlinks were created and renamed, is in the README.
Week 7
Scripts for week 7’s lab exercise (indexing and aligning) can be found in the same respository as last week. a scripts directory.
Week 8
Scripts for DNAseq SNP calling and RNAseq feature counting are found in the same repository. The README is also updated.
Week 9
RNAseq and ATACseq analysis are found in the same repository.
Week 10
For my independent project, I analyzed some RACE PCR product libraries I generated recently. The analysis and figures can be found at this GitHub repository.